of the "Cluster and Compare Page"
Trees can be displayed
as rooted or unrooted and as cladograms or phylograms
There is a link to
(1) each of the sequences in this cluster in fasta format, (2) the
Details Page for each gene, (3) the Synteny Viewer that will show
this gene as a single red box in the middle of a span, where the
target genomes can be chosen, and (4) the multiple sequence alignment
for the genes in this cluster.
The distance score
shown is of the seed for this cluster, i.e., the closest pairwise
distance score between any ingroup and outgroup gene. The phylogenetic
relationships of the genes in this cluster are shown in both Newick
(i.e., parenthetical) annotation and as a tree. Note that all gene
names begin with a tree-letter code that identifies the species,
in the form where Pin indicates P. infestans, Tps indicates
T. pseudonana, etc.